BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012H09LP1|AL426437
(629 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1053 521 e-148
>3x_Contig1053
Length = 5102
Score = 521 bits (256), Expect = e-148
Identities = 309/336 (91%), Gaps = 1/336 (0%)
Strand = Plus / Minus
Query: 1 cattttttccttggatttnaacttctttccttatctgataattgtaaaaaaataaaggat 60
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2359 cattttttccttggatttcaacttctttcctt-tctgataattgtaaaaaaataaaggat 2301
Query: 61 taaacaataaggtataaaaatgcataaaggaaaaawccagtatantgcaagcacagatgc 120
|||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 2300 taaacattaaggtataataatgcataaaggaaaaatccagtatattgcaagcacagatgc 2241
Query: 121 taggcgatcwctcgwtcaagctatttttgtgagccgcttawgaagawttccaaccatcat 180
||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 2240 taggcgatctctcgttcaagctatttttgtgagccgcttatgaagatttccaaccatcat 2181
Query: 181 gcaatcagaggwtgatgatttggracggagatatgtctccgtgtataargagcttctatt 240
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 2180 gcaatcagaggttgatgatttggaacggagatatgtctccgtgtataaagagcttctatt 2121
Query: 241 gcvactggacaagmaaattcwtatgcaaaawggtagtaaaatgratagcgaatagaaagm 300
|| |||||||||| | ||| | ||||||| |||||||| ||| ||||||||| |||||
Sbjct: 2120 gcaactggacaagctatttcttttgcaaaatggtagtaacatggatagcgaattgaaagc 2061
Query: 301 taaatcaagactamgagcattacatcaacttaatgt 336
||||||||||||| | || |||||||||||||||||
Sbjct: 2060 taaatcaagactacgtgctttacatcaacttaatgt 2025
Score = 381 bits (187), Expect = e-105
Identities = 236/257 (91%), Gaps = 1/257 (0%)
Strand = Plus / Minus
Query: 373 garagadaccaacaatgaaamcaagaggmaagtcacaacccatcttgagaaaaaatacga 432
|| ||| ||||||||||| | ||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 1997 gaaagataccaacaatgataccaagaggcaagtcacaacccttcttgagaataaatacga 1938
Query: 433 gagagatggagaactacgcgtcaacaaagaaaaacactggamattaattgaaaagtggat 492
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct: 1937 gagagatggagaactacgcgtcaacatagaaaaacactggacattaattgaaaagtggtt 1878
Query: 493 gagtcagactcaagaaacaaaaaaactgcgamaaaaatkagtggaacactctgcaaaakt 552
|||||||||||| ||||||| |||||||||| |||||| |||||||| |||||||||| |
Sbjct: 1877 gagtcagactcatgaaacaataaaactgcgacaaaaattagtggaactctctgcaaaatt 1818
Query: 553 cccagaaccagcagaaaactcaccgccagacccataagcttacacagacgcttgagatgt 612
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1817 cccagaacctgctgaaaactcaccgccagaccc-taagcttacacagacgcttgagatgt 1759
Query: 613 tgcggtccaaatamagt 629
||||||||| ||| |||
Sbjct: 1758 tgcggtccatatacagt 1742
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.716 1.34
Gapped
Lambda K H
1.41 0.716 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3656
Number of Sequences: 1807
Number of extensions: 3656
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 629
length of database: 10,358,551
effective HSP length: 16
effective length of query: 613
effective length of database: 10,329,639
effective search space: 6332068707
effective search space used: 6332068707
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.2 bits)